SubtiBank SubtiBank
bsdC [2018-06-04 13:31:20]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

bsdC [2018-06-04 13:31:20]

phenolic acid decarboxylase
locus
BSU03640
pI
5.12
mw
52.86 kDa
protein length
473 aa Sequence Blast
gene length
1419 bp Sequence Blast
function
resistance to salicylic acid
product
phenolic acid decarboxylase
essential
no
synonyms
yclC

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.10|Resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)]
  • Gene

    Coordinates
    413,157 → 414,578

    The protein

    Catalyzed reaction/ biological activity

  • conversion of vanillic acid to guaiacol [Pubmed|26658822]
  • Protein family

  • ubiD family (according to Swiss-Prot)
  • Structure

  • [PDB|5M1B] (from E. coli, 31% identity)
  • Expression and Regulation

    Operons

    genes
    [gene|8A83E44AFE9A1A635C65E6B526690AF7DA201BE1|bsdB]-[gene|FD23F4C2AFCBFE35A79116C5A707FACD454E4180|bsdC]-[gene|868DC9DE1C9C26C780F4CEAA4185640B5B6B781B|bsdD]
    description
    [Pubmed|17295427]

    regulatory mechanism

  • [protein|28D03575FA24525C162E6C161631034568E89622|BsdA]: activation, [Pubmed|17295427], in [regulon|28D03575FA24525C162E6C161631034568E89622|BsdA regulon]
  • regulation

  • induced by salicylic acid ([protein|search|BsdA]) [Pubmed|17295427]
  • view in new tab

    Biological materials

    Mutant

  • MGNA-C062 (yclC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2060 NBRP B. subtilis, Japan]
  • BKE03640 (Δ[gene|FD23F4C2AFCBFE35A79116C5A707FACD454E4180|bsdC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE03640 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TCTGAAATCTTGATAAGCCA, downstream forward: _UP4_AATAAATAAGGAAAGGATGT
  • BKK03640 (Δ[gene|FD23F4C2AFCBFE35A79116C5A707FACD454E4180|bsdC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK03640 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TCTGAAATCTTGATAAGCCA, downstream forward: _UP4_AATAAATAAGGAAAGGATGT
  • References

  • 15979273,17295427,26658822